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JOURNAL PAPERS (Selected)

 

[Further journal publications are available through ResearchGate at  https://www.researchgate.net/profile/Georgios-Stamatakos/publications  ] 

Eleni Kolokotroni , Daniel Abler, Alokendra Ghosh, Eleftheria Tzamali, James Grogan, Eleni Georgiadi, Philippe Büchler, Ravi Radhakrishnan, Helen Byrne, Vangelis Sakkalis, Katerina Nikiforaki, Ioannis Karatzanis, Nigel J. B. McFarlane, Djibril Kaba, Feng Dong, Rainer M. Bohle, Eckart Meese, Norbert Graf and Georgios Stamatakos, A Multidisciplinary Hyper-Modeling Scheme in Personalized In Silico Oncology: Coupling Cell Kinetics with Metabolism, Signaling Networks, and Biomechanics as Plug-In Component Models of a Cancer Digital Twin. J. Pers. Med. 2024, 14, 475. https://doi.org/10.3390/jpm14050475

Georgios  Stamatakos, In silico medicine: multiscale mechanistic simulation, artificial intelligence and modern statistics as tools to support decisions on real clinical problems,  Physica Medica – European Journal of Medical Physics  Invited Lectures| volume 104, Supplement 2, S5, December 2022 DOI:  https://doi.org/10.1016/S1120-1797(22)03025-3

E. C. Karademas,I. Roziner,P. Simos,K. Mazzocco,R. Pat-Horenczyk,B. Sousa, A. J. Oliveira-Maia,G. Stamatakos,F. Cardoso,E. Kolokotroni,R. Lemos,C. Marzorati,J. Mattson,Pettini Greta,L. Travado &P. Poikonen-Saksela. (2023). Changes over time in self-efficacy to cope with cancer and well-being in women with breast cancer: a cross-cultural study. Psychology & Health, 1–14.   DOI:  https://doi.org/10.1080/08870446.2023.2202205

Pat-Horenczyk, R.; Kelada, L.; Kolokotroni, E.; Stamatakos, G.; Dahabre, R.; Bentley, G.; Perry, S.; Karademas, E.C.; Simos, P.; Poikonen-Saksela, P.; Mazzocco K., Sousa B., Maia, A.O, on behalf of the BOUNCE Consortium,  Trajectories of Quality of Life among an International Sample of Women during the First Year after the Diagnosis of Early Breast Cancer: A Latent Growth Curve Analysis. Cancers 2023, 15, 1961. https://doi.org/10.3390/cancers15071961

Leena Vehmanen, J. Mattson, ​Evangelos Karademas, Albino J. Oliveira-Maia, B. Sousa, Ruth Pat-Horenczyk, K. Mazzocco, Panagiotis G. Simos, Fatima Cardoso, Greta Pettini, C Marzorati, E. Kolokotroni, Georgios Stamatakos, Diana Frasquilho, P. Poikonen-Saksela, Associations between Physical Exercise, Quality of Life, Psychological Symptoms and Treatment Side Effects in Early Breast Cancer, The Breast JournalVolume 2022, Article ID 9921575, 8 pages  https://doi.org/10.1155/2022/9921575

Oraianthi Fiste, Michalis Liontos, Flora Zagouria, Georgios Stamatakos, Meletios Athanasios Dimopoulos, "Machine learning applications in gynecological cancer: A critical review," Critical Reviews in Oncology/Hematology, Volume 179, 2022,

103808, ISSN 1040-8428, https://doi.org/10.1016/j.critrevonc.2022.103808 .

 

E. C. Karademas , P. Simos , R. Pat‑Horenczyk. I. Roziner, K. Mazzocco, B. Sousa, G. Stamatakos, G. Tsakou, F. Cardoso, D. Frasquilho, E. Kolokotroni, C. Marzorati, J. Mattson,  A. J. Oliveira‑Maia, K. Perakis · G. Pettini , L. Vehmanen,  P.Poikonen‑Saksela, "The Interplay Between Trait Resilience and Coping Self‑efcacy in Patients with Breast Cancer: An International Study," Journal of Clinical Psychology in Medical Settings,   https://doi.org/10.1007/s10880-022-09872-xhttps://link.springer.com/content/pdf/10.1007/s10880-022-09872-x.pdf (2022), Springer

E. C. Karademas, I. Roziner, K. Mazzocco, R. Pat-Horenczyk, B. Sousa, A. J, Oliveira-Maia, G. Stamatakos, F. Cardoso, D. Frasquilho, E. Kolokotroni, R. Lemos, C. Marzorati, J. Mattson, G. Pettini, E. Spyropoulou, P. PoikonenSaksela & P. SimosOn Behalf of BOUNCE Consortium, (2022) "The mutual determination of self-efficacy to cope with cancer and cancer-related coping over time: a prospective study in women with breast cancer," Psychology & Health, DOI: 10.1080/08870446.2022.2038157,  https://doi.org/10.1080/08870446.2022.2038157
 

Greta Pettini;  Virginia Sanchini;  Ruth Pat-Horenczyk;  Berta Sousa;  Marianna Masiero;  Chiara Marzorati;  Viviana Galimberti; Elisabetta Munzone;  Johanna Mattson;  Leena Vehmanen;  Meri Utriainen;  Ilan Roziner;  Raquel Lemos;  Diana Frasquilho; Fatima Cardoso;  Albino J Oliveira-Maia;  Eleni Kolokotrini;  Georgios S. Stamatakos;  Riikka-Leena Leskelä;  Ira Haavisto;  Juha Salonen;  Robert Richter;  Evangelos C Karademas;  Paula Poikonen-Saksela;  Ketti Mazzocco, "Predicting Effective Adaptation to Breast Cancer to Help Women to BOUNCE Back: study protocol for a multicenter clinical pilot," JMIR Reseach Protocols, accepted on Apr. 1 , 2022,  https://preprints.jmir.org/preprint/34564/accepted (preprint available through this link)

P. Poikonen-Saksela*, E. Kolokotroni*, L. Vehmanen, J. Mattson, G. Stamatakos, R. Huovinen, P.L. Kellokumpu-Lehtinen, C. Blomqvist, T. Saarto, A graphical LASSO analysis of global quality of life, sub scales of the EORTC QLQ-C30 instrument and depression in early breast cancer, Scientific Reports, (2022) 12:2112,  Nature Portfolio, https://doi.org/10.1038/s41598-022-06138-2  

* contributed equally

E. C. Karademas,  P. Simos, Ruth Pat‐Horenczyk, I. Roziner, K. Mazzocco,  B, Sousa, Albino J. Oliveira‐Maia, G. Stamatakos, F. Cardoso, Diana Frasquilho, E. Kolokotroni, C. Marzorati, J. Mattson, G. Pettini, P. Poikonen‐Saksela, BOUNCE consortium, "Cognitive, emotional, and behavioral mediators of the impact of coping self‐effcacy on adaptation to breast cancer: An international prospective study," Psycho‐Oncology. 2021;1–8. (2021)  https://doi.org/10.1002/pon.5730

 

S. Almeida, D. Frasquilho, G. Cotovio, F. Viana, B. Sousa, J. Oliveira, J. Mattson, C. Marzorati, I. Roziner, E. Karademas, E. Kolokotroni, G.S. Stamatakos, K. Mazzocco, R. Pat-Horenczyk, P. Poikonen-Saksela, F. Cardoso, A. Oliveira-Maia, "The psychological impact of the COVID-19 pandemic on patients with early breast cancer." Annals of Oncology, Volume 32, Issue S2, 2021, p.S79, https://doi.org/10.1016/j.annonc.2021.03.146


D. Gabriele , A. Guarneri, S. Bartoncini, F. Munoz, M. Tamponi, F. Russo, G. Stamatakos, C. Guiot, D. Regge, U. Ricardi, "An external validation of the Candiolo nomogram in a cohort of prostate cancer patients treated by external‐beam radiotherapy," Radiationj Oncology, (2021) 16:85,  https://doi.org/10.1186/s13014-021-01814-5

M. Antonopoulos, D. D Dionysiou, G. S Stamatakos,  Nikolaos K Uzunoglu, "Publisher Correction to: Three-dimensional tumor growth in time-varying chemical fields: a modeling framework and theoretical study,"  BMC Bioinformatics 20(1), Aug. 2019, DOI: ​10.1186/s12859-019-3102-0  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3102-0    

M. Antonopoulos, D. D Dionysiou, G. S Stamatakos,  Nikolaos K Uzunoglu, "Three-dimensional tumor growth in time-varying chemical fields: a modeling framework and theoretical study,"  BMC Bioinformatics 20(1), Aug. 2019, DOI: ​10.1186/s12859-019-2997-9    https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2997-9

M. Antonopoulos, S. van Gool, D. Dionysiou, N. Graf, and G. Stamatakos,  (2019). "Immune phenotype correlates with survival in patients with GBM treated with standard temozolomide based therapy and immunotherapy," Anticancer Research, 39, 2043-2051   https://www.ncbi.nlm.nih.gov/pubmed/30952748 

 

C. A. Kyroudis, D. D. Dionysiou, E. A.  Kolokotroni  and  G. S. Stamatakos (2019) , “Studying the regression profiles of cervical tumours during radiotherapy treatment using a patient-specific multiscale model”, Scientific Reports – Nature Publishing Group,  9:1081  https://doi.org/10.1038/s41598-018-37155-9

 

Ouzounoglou E, Kolokotroni E, Stanulla M, Stamatakos GS. 2018 A study on the predictability of acute lymphoblastic leukaemia response to treatment using a hybrid oncosimulator. Interface Focus 8: 20160163. https://royalsocietypublishing.org/doi/pdf/10.1098/rsfs.2016.0163 ,  http://dx.doi.org/10.1098/rsfs.2016.0163

M. Antonopoulos, S. Van Gool, N. Graf, and G. S. Stamatakos (2017): ATIM-28. IMMUNE PROFILES AT START OF TEMOZOLOMID-BASED STANDARD TREATMENT AND DC-BASED IMMUNOTHERAPY STRONGLY CORRELATE WITH OVERALL SURVIVAL OUTCOME IN GBM PATIENTS. Neuro-Oncology 11/2017; 19(suppl_6):vi32-vi32., DOI:10.1093/neuonc/nox168.122  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5693096/

M. Protopapa, A. Zygogianni, G. S. Stamatakos, C. Antypas, C. Armpilia, N. K. Uzunoglu, and V. Kouloulias (2017) : Clinical implications of in silico mathematical modeling for glioblastoma: a critical review. Journal of Neuro-Oncology 10/2017; 136(247)., DOI:10.1007/s11060-017-2650-2  https://www.ncbi.nlm.nih.gov/pubmed/29081039

Georgios Stamatakos, N. Graf (2017) : Computational Horizons in Cancer (CHIC). Clinical Therapeutics 08/2017; 39(8):e107-e108., DOI:10.1016/j.clinthera.2017.05.333 https://www.clinicaltherapeutics.com/article/S0149-2918(17)30631-8/abstract

Georgios S Stamatakos, Stavroula G Giatili: (2017)  A Numerical Handling of the Boundary Conditions Imposed by the Skull on an Inhomogeneous DiffusionReaction Model of Glioblastoma Invasion Into the Brain: Clinical Validation Aspects. Cancer informatics 02/2017; 16(16):1-16., DOI:10.1177/1176935116684824

https://journals.sagepub.com/doi/10.1177/1176935116684824

Katerina D. Argyri, Dimitra D. Dionysiou, Fay D. Misichroni, Georgios S. Stamatakos: Numerical simulation of vascular tumour growth under antiangiogenic treatment: Addressing the paradigm of single-agent bevacizumab therapy with the use of experimental data. Biology Direct 12/2016; 11(1)., DOI:10.1186/s13062-016-0114-9

https://biologydirect.biomedcentral.com/articles/10.1186/s13062-016-0114-9

Nikolaos A. Christodoulou, Nikolaos E. Tousert, Eleni Ch. Georgiadi, Katerina D. Argyri, Fay D. Misichroni, Georgios S. Stamatakos: A Modular Repository-based Infrastructure for Simulation Model Storage and Execution Support in the Context of In Silico Oncology and In Silico Medicine. Cancer informatics 10/2016; 2016(15):219–235., DOI:10.4137/CIN.S40189

https://journals.sagepub.com/doi/full/10.4137/CIN.S40189

Eleni Kolokotroni, Dimitra Dionysiou, Christian Veith, Yoo-Jin Kim, Jörg Sabczynski, Astrid Franz, Aleksandar Grgic, Jan Palm, Rainer M. Bohle, Georgios Stamatakos: In Silico Oncology: Quantification of the In Vivo Antitumor Efficacy of Cisplatin-Based Doublet Therapy in Non-Small Cell Lung Cancer (NSCLC) through a Multiscale Mechanistic Model. PLoS Computational Biology 09/2016; 12(9):e1005093., DOI:10.1371/journal.pcbi.1005093

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005093

Anca Bucur, Jasper van Leeuwen, Nikolaos Christodoulou, Kamana Sigdel, Katerina Argyri, Lefteris Koumakis, Norbert Graf, Georgios Stamatakos: Workflow-driven clinical decision support for personalized oncology. BMC Medical Informatics and Decision Making 07/2016; 16(S2)., DOI:10.1186/s12911-016-0314-3

https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-016-0314-3

Ouzounoglou E, Kolokotroni E, Stanulla M, Stamatakos GS. 2018 A study on the predictability of acute lymphoblastic leukaemia response to treatment using a hybrid oncosimulator. Interface Focus 8: 20160163. https://royalsocietypublishing.org/doi/pdf/10.1098/rsfs.2016.0163 ,  http://dx.doi.org/10.1098/rsfs.2016.0163

D. Abler, P. Büchler, G.S. Stamatakos: CHIC – A Multi-scale Modelling Platform for in-silico Oncology. Radiotherapy and Oncology 02/2016; 118:S1., DOI:10.1016/S0167-8140(16)30001-9

https://www.thegreenjournal.com/article/S0167-8140(16)30001-9/abstract

Markos Antonopoulos, Georgios Stamatakos: In Silico Neuro-Oncology: Brownian Motion-Based Mathematical Treatment as a Potential Platform for Modeling the Infitration of Glioma Cells into Normal Brain Tissue. Cancer informatics 08/2015; 14 (S4)., DOI:10.4137/CIN.S19341

https://www.ncbi.nlm.nih.gov/pubmed/26309390

Olaf Wolkenhauer, Charles Auffray, Olivier Brass, Jean Clairambault, Andreas Deutsch, Dirk Drasdo, Francesco Gervasio, Luigi Preziosi, Philip Maini, Anna Marciniak-Czochra, Christina Kossow, Lars Kuepfer, Katja Rateitschak, Ignacio Ramis-Conde, Benjamin Ribba, Andreas Schuppert, Rod Smallwood, Georgios Stamatakos, Felix Winter, Helen Byrne: Enabling multiscale modeling in systems medicine. Genome Medicine 03/2014; 6(21)., DOI:10.1186/gm538

https://genomemedicine.biomedcentral.com/articles/10.1186/gm538

Vangelis Sakkalis, Stelios Sfakianakis, Eleftheria Tzamali, Kostas Marias, Georgios Stamatakos, Fay Misichroni, Eleftherios Ouzounoglou, Eleni Kolokotroni, Dimitra Dionysiou, David Johnson, Steve McKeever, Norbert Graf: Web-Based Workflow Planning Platform Supporting the Design and Execution of Complex Multiscale Cancer Models. IEEE Journal of Biomedical and Health Informatics 01/2014; PP(99)., DOI:10.1109/JBHI.2013.2297167

https://ieeexplore.ieee.org/document/6701383

Georgios Stamatakos, Dimitra Dionysiou, Aran Lunzer, Robert Belleman, Eleni Kolokotroni, Eleni Georgiadi, Marius Erdt, Juliusz Pukacki, Stefan Rueping, Stavroula Giatili, Alberto d'Onofrio, Stelios Sfakianakis, Kostas Marias, Christine Desmedt, Manolis Tsiknakis, Norbert Graf: The Technologically Integrated Oncosimulator: Combining Multiscale Cancer Modeling With Information Technology in the In Silico Oncology Context. IEEE J Biomed Health Inform. 2014 May; 18(3):840-54.  DOI:10.1109/JBHI.2013.2284276 https://ieeexplore.ieee.org/document/6617658

Georgios S Stamatakos, Eleni Kolokotroni, Dimitra Dionysiou, Christian Veith, Yoo-Jin Kim, Astrid Franz, Kostas Marias, Joerg Sabczynski, Rainer Bohle, Norbert Graf: In silico oncology: Exploiting clinical studies to clinically adapt and validate multiscale oncosimulators. Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 07/2013; 2013:5545-5549., DOI:10.1109/EMBC.2013.6610806

https://www.ncbi.nlm.nih.gov/pubmed/24110993

David Johnson, Steve McKeever, Georgios Stamatakos, Dimitra Dionysiou, Norbert Graf, Vangelis Sakkalis, Konstantinos Marias, Zhihui Wang, Thomas S Deisboeck: Dealing with Diversity in Computational Cancer Modeling. Cancer informatics 05/2013; 12:115-124., DOI:10.4137/CIN.S11583

https://www.ncbi.nlm.nih.gov/pubmed/23700360

Georgios S Stamatakos, Norbert Graf: Multiscale Cancer Modeling and In Silico Oncology: Emerging Computational Frontiers in Basic and Translational Cancer Research. DOI:10.4172/2155-9538.1000e114

https://www.omicsonline.org/multiscale-cancer-modeling-and-in-silico-oncology-emerging-computational-frontiers-2155-9538.1000e114.php?aid=14168

Eleni Ch Georgiadi, Dimitra D Dionysiou, Norbert Graf, Georgios S Stamatakos: Towards in silico oncology: Adapting a four dimensional nephroblastoma treatment model to a clinical trial case based on multi-method sensitivity analysis. Computers in Biology and Medicine 10/2012; 42(11):1064-78., DOI:10.1016/j.compbiomed.2012.08.008

https://www.ncbi.nlm.nih.gov/pubmed/23063290

Stelios Sfakianakis, Vangelis Sakkalis, Kostas Marias, Georgios Stamatakos, Steve McKeever, Thomas S Deisboeck, Norbert Graf: An architecture for integrating cancer model repositories. Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 08/2012; 2012:6628-31., DOI:10.1109/EMBC.2012.6347514  

https://ieeexplore.ieee.org/document/6347514

Stavroula G. Giatili, Georgios S. Stamatakos: A detailed numerical treatment of the boundary conditions imposed by the skull on a diffusion–reaction model of glioma tumor growth. Clinical validation aspects. Applied Mathematics and Computation 05/2012; 218(17):8779-8799.,   doi.org/10.1016/j.amc.2012.02.036

https://www.sciencedirect.com/science/article/pii/S0096300312001634

Stefan Bauer, Christian May, Dimitra D. Dionysiou, Georgios S. Stamatakos, Philippe Buechler, Mauricio Reyes: Multiscale Modeling for Image Analysis of Brain Tumor Studies. IEEE Transactions on Biomedical Engineering 01/2012; 59(1):25-29., DOI:10.1109/TBME.2011.2163406  https://ieeexplore.ieee.org/document/5970097

E.A. Kolokotroni, D.D. Dionysiou, N.K. Uzunoglu, G.S. Stamatakos: Studying the growth kinetics of untreated clinical tumors by using an advanced discrete simulation model. Mathematical and Computer Modelling 11/2011; 54(9-10):1989-2006., DOI:10.1016/j.mcm.2011.05.007  https://www.sciencedirect.com/science/article/pii/S0895717711002767

Christian P May, Eleni Kolokotroni, Georgios S Stamatakos, Philippe Büchler: Coupling biomechanics to a cellular level model: An approach to patient-specific image driven multi-scale and multi-physics tumor simulation. Progress in Biophysics and Molecular Biology 07/2011; 107(1):193-9., DOI:10.1016/j.pbiomolbio.2011.06.007  https://www.sciencedirect.com/science/article/abs/pii/S007961071100054X

K Marias, D Dionysiou, V Sakkalis, N Graf, R M Bohle, P V Coveney, S Wan, A Folarin, P Büchler, M Reyes, G Clapworthy, E Liu, J Sabczynski, T Bily, A Roniotis, M Tsiknakis, E Kolokotroni, S Giatili, C Veith, E Messe, H Stenzhorn, Yoo-Jin Kim, S Zasada, A N Haidar, C May, S Bauer, T Wang, Y Zhao, M Karasek, R Grewer, A Franz, G Stamatakos: Clinically driven design of multi-scale cancer models: The ContraCancrum project paradigm. Interface focus: a theme supplement of Journal of the Royal Society interface 06/2011; 1(3):450-61., DOI:10.1098/rsfs.2010.0037  https://royalsocietypublishing.org/doi/10.1098/rsfs.2010.0037

Georgios S Stamatakos, Eleni C Georgiadi, Norbert Graf, Eleni A Kolokotroni, Dimitra D Dionysiou: Exploiting Clinical Trial Data Drastically Narrows the Window of Possible Solutions to the Problem of Clinical Adaptation of a Multiscale Cancer Model. PLoS ONE 03/2011; 6(3):e17594., DOI:10.1371/journal.pone.0017594

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017594

Theodoros E. Athanaileas, Andreas Menychtas, Dimitra D. Dionysiou, Dimosthenis Kyriazis, Dimitra I. Kaklamani, Theodora A. Varvarigou, Nikolaos K. Uzunoglu, Georgios S. Stamatakos: Exploiting grid technologies for the simulation of clinical trials: The paradigm of in silico radiation oncology. Simulation 10/2010; 87(10):893-910., DOI:10.1177/0037549710375437  https://journals.sagepub.com/doi/10.1177/0037549710375437

G.S. Stamatakos, E.A. Kolokotroni, D.D. Dionysiou, E Ch Georgiadi, C Desmedt: An Advanced Discrete State-Discrete Event Multiscale Simulation Model of The Response of A Solid Tumor to Chemotherapy: Mimicking a Clinical Study. Journal of Theoretical Biology 09/2010; 266(1):124-39.,  DOI: 10.1016/j.jtbi.2010.05.019

https://www.ncbi.nlm.nih.gov/pubmed/20515697

Alexandros Roniotis, Kostas Marias, Vangelis Sakkalis, Georgios Stamatakos, Michalis Zervakis: Comparing Finite Elements and Finite Differences for developing Diffusive Models of glioma growth. Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 08/2010; 2010:6797-800., DOI:10.1109/IEMBS.2010.5625973  https://pubmed.ncbi.nlm.nih.gov/21095843/

K. Marias, V. Sakkalis, A. Roniotis, C. Farmaki, G. Stamatakos, D. Dionysiou, S. Giatili, N. Uzunoglou, N. Graf, R. Bohle, E. Messe, P. V. Coveney, S. Manos, S. Wan, A. Folarin, S. Nagl, P. Büchler, T. Bardyn, M. Reyes, G. Clapworthy, N. Mcfarlane, E. Liu, T. Bily, M. Balek, M. Karasek, V. Bednar, J. Sabczynski, R. Opfer, S. Renisch, I. C. Carlsen: Clinically Oriented Translational Cancer Multilevel Modeling: The ContraCancrum Project. IFMBE proceedings 01/2010; 25(4):2124-2127., DOI:10.1007/978-3-642-03882-2_564  https://link.springer.com/chapter/10.1007/978-3-642-03882-2_564

G.S.Stamatakos, E.Kolokotroni, D.Dionysiou, E.Georgiadi, S.Giatili: In Silico oncology: a top-down multiscale simulator of cancer dynamics. Studying the effect of symmetric stem cell division on the cellular constitution of a tumour. IFMBE proceedings 01/2010; 25(4):1830-1833., DOI:10.1007/978-3-642-03882-2_486  https://link.springer.com/chapter/10.1007/978-3-642-03882-2_486

Georgios S Stamatakos, Dimitra D Dionysiou: Introduction of Hypermatrix and Operator Notation into a Discrete Mathematics Simulation Model of Malignant Tumour Response to Therapeutic Schemes In Vivo. Some Operator Properties. Cancer informatics 10/2009; 7:239-51., DOI:10.4137/CIN.S2712 https://journals.sagepub.com/doi/10.4137/CIN.S2712

N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, G. Stamatakos: ‘In Silico' Oncology for Clinical Decision Making in the Context of Nephroblastoma. Klinische Pädiatrie 03/2009; 221(3):141-149., DOI:10.1055/s-0029-1216368  https://pubmed.ncbi.nlm.nih.gov/19437361/

G.S. Stamatakos, E. Kolokotroni, D. Dionysiou, E. Georgiadi, S. Giatili: In silico oncology: A top-down multiscale simulator of cancer dynamics. Studying the effect of symmetric stem cell division on the cellular constitution of a tumour. IFMBE proceedings 01/2009; 25(4):1830-1833., DOI:10.1007/978-3-642-03882-2-486  https://doi.org/10.1007/978-3-642-03882-2_486

D D Dionysiou, G S Stamatakos, D Gintides, N Uzunoglu, K Kyriaki: Critical Parameters Determining Standard Radiotherapy Treatment Outcome for Glioblastoma Multiforme: A Computer Simulation. The Open Biomedical Engineering Journal 02/2008; 2(1):43-51., DOI:10.2174/1874120700802010043  https://pubmed.ncbi.nlm.nih.gov/19662116/

N Graf, C Desmedt, F Buffa, D Kafetzopoulos, N Forgo, R Kollek, A Hoppe, G Stamatakos, M Tsiknakis: Post-genomic clinical trials: the perspective of ACGT. ecancermedicalscience 01/2008; 2., 2:66 DOI:10.3332/ecancer.2008.66 https://ecancer.org/en/journal/article/66-post-genomic-clinical-trials-the-perspective-of-acgt

N. Graf, C. Desmedt, A. Hoppe, M. Tsiknakis, D. Dionysiou, G. Stamatakos: 398 POSTER Clinical requirements of “In Silico Oncology” as part of the integrated project ACGT (Advancing Clinico-Genomic Trials on Cancer). EJC Supplements 09/2007; 5(4):83.,   DOI: https://doi.org/10.1016/S1359-6349(07)70416-0  https://www.sciencedirect.com/science/article/pii/S1359634907704160?via%3Dihub

Dimitra D Dionysiou, Georgios S Stamatakos: Applying a 4D Multiscale In Vivo Tumor Growth Model to the Exploration of Radiotherapy Scheduling: The Effects of Weekend Treatment Gaps and P53 Gene Status on the Response of Fast Growing Solid Tumors. Cancer informatics 02/2007; 2(2):113-21., DOI:10.1177/117693510600200001

https://journals.sagepub.com/doi/full/10.1177/117693510600200001

Georgios S Stamatakos: Spotlight on Cancer Informatics. Cancer informatics 02/2007; 2:83-6., DOI:10.1177/117693510600200029

https://journals.sagepub.com/doi/full/10.1177/117693510600200029

 V P Antipas, G.Stamatakos, N K Uzunoglu: A patient-specific in vivo tumor and normal tissue model for prediction of the response to radiotherapy - A computer simulation approach. Methods of Information in Medicine 02/2007; 46(3):367-75.,   DOI: 10.1160/ME0312  https://www.thieme-connect.com/products/ejournals/abstract/10.1160/ME0312

Georgios S Stamatakos, Dimitra D Dionysiou, Norbert M Graf, Nikoletta A Sofra, Christine Desmedt, Alexander Hoppe, Nikolaos K Uzunoglu, Manolis Tsiknakis: The "Oncosimulator": a multilevel, clinically oriented simulation system of tumor growth and organism response to therapeutic schemes. Towards the clinical evaluation of in silico oncology.  Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 02/2007; 2007:6629-32., DOI: 10.1109/IEMBS.2007.4353879  

https://ieeexplore.ieee.org/abstract/document/4353879

Georgios S Stamatakos, Vassilis P Antipas, Nikolaos K Uzunoglu: Simulating chemotherapeutic schemes in the individualized treatment context: The paradigm of glioblastoma multiforme treated by temozolomide in vivo. Computers in Biology and Medicine 12/2006; 36(11):1216-34., DOI:10.1016/j.compbiomed.2005.06.002

https://www.sciencedirect.com/science/article/pii/S0010482505000934?via%3Dihub

Georgios S Stamatakos, Vassilis P Antipas, Nikolaos K Uzunoglu: A spatiotemporal, patient individualized simulation model of solid tumor response to chemotherapy in vivo: The paradigm of glioblastoma multiforme treated by temozolomide. IEEE Transactions on Biomedical Engineering 09/2006; 53(8):1467-77., DOI:10.1109/TBME.2006.873761

https://ieeexplore.ieee.org/document/1658141

Dimitra D Dionysiou, Georgios S Stamatakos, Nikolaos K Uzunoglu, Konstantina S Nikita: A computer simulation of in vivo tumour growth and response to radiotherapy: New algorithms and parametric results. Computers in Biology and Medicine 06/2006; 36(5):448-64., DOI:10.1016/j.compbiomed.2005.02.003

https://www.sciencedirect.com/science/article/pii/S0010482505000466?via%3Dihub

G S Stamatakos, V P Antipas, N K Uzunoglu, R G Dale: A four-dimensional computer simulation model of the in vivo response to radiotherapy of glioblastoma multiforme: Studies on the effect of clonogenic cell density. British Journal of Radiology 06/2006; 79(941):389-400., DOI:10.1259/bjr/30604050

https://www.birpublications.org/doi/10.1259/bjr/30604050

V.P. Antipas, G.S. Stamatakos, N.K. Uzunoglu: Glioblastoma multiforme treated by the chemotherapeutic agent temozolomide in vivo: A 4D simulation model of the tumor response. Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 02/2005; 6:6100-3.,  DOI: 10.1109/IEMBS.2005.1615885 , https://pubmed.ncbi.nlm.nih.gov/17281655/ .

Evangelia I Zacharaki, Georgios S Stamatakos, Konstantina S Nikita, Nikolaos K Uzunoglu: Simulating growth dynamics and radiation response of avascular tumour spheroids - Model validation in the case of an EMT6/Ro multicellular spheroid. Computer Methods and Programs in Biomedicine 01/2005; 76(3):193-206., DOI:10.1016/j.cmpb.2004.07.003   

https://pubmed.ncbi.nlm.nih.gov/15501506/

Dimitra D Dionysiou, Georgios S Stamatakos, Nikolaos K Uzunoglu, Konstantina S Nikita, Antigoni Marioli: A four-dimensional simulation model of tumour response to radiotherapy in vivo: Parametric validation considering radiosensitivity, genetic profile and fractionation. Journal of Theoretical Biology 10/2004; 230(1):1-20., DOI:10.1016/j.jtbi.2004.03.024

https://www.sciencedirect.com/science/article/pii/S002251930400133X?via%3Dihub

Vassilis P Antipas, Georgios S Stamatakos, Nikolaos K Uzunoglu, Dimitra D Dionysiou, Roger G Dale: A spatio-temporal simulation model of the response of solid tumours to radiotherapy in vivo: Parametric validation concerning oxygen enhancement ratio and cell cycle duration. Physics in Medicine and Biology 05/2004; 49(8):1485-504., DOI:10.1088/0031-9155/49/8/008  https://iopscience.iop.org/article/10.1088/0031-9155/49/8/008

E I Zacharaki, G D Stamatakos, K S Nikita, N K Uzunoglu: Stochastic modeling and validation of growth saturation and radiotherapeutic response of multicellular tumor spheroids.. Conference proceedings:  Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 02/2004; 4:3039-42., DOI:10.1109/IEMBS.2004.1403860

https://www.ncbi.nlm.nih.gov/pubmed/17270919

D D Dionysiou, T Peristeris, G S Stamatakos, K S Nikita, N K Uzunoglu: The genetic profile of a tumor as a determinant of its response to radiotherapy: A computer simulation of two different radiotherapeutic schemes. Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 02/2004; 4:3035-8., DOI:10.1109/IEMBS.2004.1403859 https://pubmed.ncbi.nlm.nih.gov/17270918/

Α. Karafotias, NK Uzunoglu, GS Stamatakos: On the limits of the applicability of the Method of Auxiliary Sources: the transition radiation electromagnetic problem. Electromagnetics 10/2003; 23(7):563-577., DOI:10.1080/02726340390236986

https://www.tandfonline.com/doi/abs/10.1080/02726340390236986

 

V.Antipas, G.Stamatakos, N.Uzunoglu, M.Synodinou: A four dimensional simulation model of the response of solid tumours to radiotherapy in vivo: advances and validation. EJC Supplements 09/2003; 1(5):162-163., DOI:10.1016/S1359-6349(03)90568-4

https://www.sciencedirect.com/journal/european-journal-of-cancer-supplements/vol/1/issue/5?page-size=100&page=6

Georgios S. Stamatakos, Dimitra D. Dionysiou, Evangelia I. Zacharaki, Nikolaos A. Mouravliansky, Konstantina S. Nikita, Nikolaos K. Uzunoglu: In silico radiation oncology: Combining novel simulation algorithms with current visualization techniques. Proceedings of the IEEE 12/2002;, DOI:10.1109/JPROC.2002.804685

https://ieeexplore.ieee.org/abstract/document/1046955

G S Stamatakos, Evangelia I. Zacharaki, Mersini I. Makropoulou, Nikolaos A. Mouravliansky, Andy Marsh, Konstantina S. Nikita, Nikolaos K. Uzunoglu: Modeling tumor growth and irradiation response in vitro - A combination of high-performance computing and web-based technologies including VRML visualization. IEEE Transactions on Information Technology in Biomedicine 01/2002; 5(4):279-89., DOI:10.1109/4233.966103

https://www.ncbi.nlm.nih.gov/pubmed/11759834

G.S. Stamatakos, E.I. Zacharaki, N.K. Uzunoglu, K.S. Nikita: Tumor growth and response to irradiation in vitro: a technologically advanced simulation model. International journal of radiation oncology, biology, physics 11/2001; 51(3):240-241., DOI:10.1016/S0360-3016(01)02262-3

https://www.redjournal.org/article/S0360-3016(01)02262-3/abstract

G.Stamatakos, D.Dionysiou, K.Nikita, N.Zamboglou, D.Baltas, G.Pissakas, N.K.Uzunoglu: In vivo tumor growth and response to radiation therapy: a novel algorithmic description. International journal of radiation oncology, biology, physics 11/2001; 51(3)., DOI:10.1016/S0360-3016(01)02261-1

https://www.redjournal.org/article/S0360-3016(01)02261-1/abstract

Konstantina S. Nikita, Georgios S. Stamatakos, Nikolaos K. Uzunoglu, Aggelos Karafotias: Analysis of the interaction between a layered spherical human head model and a finite-length dipole. IEEE Transactions on Microwave Theory and Techniques 12/2000; 48(11-48):2003 - 2013., DOI:10.1109/22.884189

https://ieeexplore.ieee.org/document/884189

Μ.Makropoulou, Eleni Drakaki, Georgios Stamatakos, Alexander A. Serafetinides: Quantitative estimation of absorbing chromophores in tissue simulators based on laser induced spectroscopy and scattering measurements. Proc SPIE 11/2000; 4162:76-85., DOI:10.1117/12.405926  https://www.spiedigitallibrary.org/conference-proceedings-of-spie/4162/0000/Quantitative-estimation-of-absorbing-chromophores-in-tissue-simulators-based-on/10.1117/12.405926.full

Georgios S. Stamatakos, Konstantina S. Nikita, Nikolaos K. Uzunoglu, Aggelos Karafotias: The Green’s function-method of auxiliary sources technique (Green/MAS). Application to mobile phone dosimetry. Scattering Theory and Biomedical Engineering Modelling and Applications  pp. 172-184 (2000) DOI:10.1142/9789812792327_0018  

https://www.worldscientific.com/doi/abs/10.1142/9789812792327_0018?download=true

G S Stamatakos, N K Uzunoglu, K Delibasis, N Mouravliansky, A Marsh, M Makropoulou: Tumor growth simulation and visualization: A review and a web based paradigm. Studies in health technology and informatics 02/2000; 79:255-74., PMID: 11151617    DOI:10.3233/978-1-60750-923-3-255  https://pubmed.ncbi.nlm.nih.gov/11151617/

G.S.Stamatakos, E.Zacharaki, N.Mouravliansky, K.K.Delibasis, K.S.Nikita, N.Uzunoglu: Using Web Technologies and Meta-Computing to Visualise a Simplified Simulation Model of Tumor Growth in Vitro. Lecture Notes in Computer Science 01/1999; 1593:973-982.   https://doi.org/10.1007/BFb0100658  https://link.springer.com/chapter/10.1007/BFb0100658

Georgios S. Stamatakos, Nikolaos K. Uzunoglu, Konstantinos Delibasis, Mersini Makropoulou, Nikolaos Mouravliansky, Andy Marsh: : A simplified simulation model and virtual reality visualization of tumour growth in vitro. Future Generation Computer Systems 06/1998; 14(1-2):79-89., DOI:10.1016/S0167-739X(98)00011-9  

https://www.sciencedirect.com/science/article/pii/S0167739X98000119

Georgios S. Stamatakos, Dido Yova, Nikolaos K. Uzunoglu: Integral equation model of light scattering by an oriented monodisperse system of triaxial dielectric ellipsoids: Application in ectacytometry. Applied Optics 10/1997; 36(25):6503-12., DOI:10.1364/AO.36.006503  https://opg.optica.org/ao/abstract.cfm?uri=ao-36-25-6503

Nikolaos K Uzunoglou, Dido M Yova, Georgios Stamatakos: Light scattering by pathological and deformed erythrocytes: an integral equation model. Journal of Biomedical Optics 07/1997; 2(3):310-318., DOI:10.1117/12.275330  https://www.spiedigitallibrary.org/journals/journal-of-biomedical-optics/volume-2/issue-03/0000/Light-scattering-by-pathological-and-deformed-erythrocytes--an-integral/10.1117/12.275330.full#_=_

Georgios Stamatakos, Nikolaos K Uzunoglou, Dido M Yova: Integral equation solution to the scattering of electromagnetic radiation by a system of two interacting triaxial dielectric ellipsoids: the case of a two red blood cell Rouleau. Journal of Biomedical Optics 07/1997; 2(3):282-294., DOI:10.1117/12.275331

https://www.spiedigitallibrary.org/journals/Journal-of-Biomedical-Optics/volume-2/issue-03/0000/Integral-equation-solution-to-the-scattering-of-electromagnetic/10.1117/12.275331.full

N.K. Uzunoglu, D. Yova, G.S. Stamatakos: Light scattering by pathological and deformed erythrocytes: An integral equation model. Journal of Biomedical Optics 01/1997; 2(3):310-318.

https://www.spiedigitallibrary.org/journals/Journal-of-Biomedical-Optics/volume-2/issue-3/0000/Light-scattering-by-pathological-and-deformed-erythrocytes--an-integral/10.1117/12.275330.full

G. S. Stamatakos, N. K. Uzunoglu: An Integral Equation Solution To the Scattering of Electromagnetic Radiation By a Linear Chain of Interacting Triaxial Dielectric Ellipsoids. the Case of a Red Blood Cell Rouleau. Journal of Electromagnetic Waves and Applications 01/1997; 11(7):949-980., DOI:10.1163/156939397X00369

https://www.tandfonline.com/doi/abs/10.1163/156939397X00369

N. Uzunoglu, Georgios Stamatakos, Dimitrios Koutsouris, and D. Yova: Light scattering by adjacent red blood cells - a mathematical model. Proc SPIE 01/1995; 2326:334-345., DOI:10.1117/12.200836 https://www.spiedigitallibrary.org/conference-proceedings-of-spie/2326/1/Light-scattering-by-adjacent-red-blood-cells--a-mathematical/10.1117/12.200836.short

Stamatakos G, Yova D, Koutsouris D. and Uzunoglu , "A Mathematical Model for Light Scattering by Red-Blood Cells Aggregates",  (Proceedings of the Second European Conference on Engineering and Medicine, Stuttgart, Germany, April 25-28, 1993), Tech. Health Care, pp. 334-335. Technology and Health Care, V1S:332-335 (1993).

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